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Hydrology

Yilin Fang

Yilin Fang

Pacific Northwest National Laboratory
PO Box 999
Richland, WA 99352

PNNL Publications

2013

  • Bao J, Z Xu, G Lin, and Y Fang. 2013. "Evaluating the impact of aquifer layer properties on geomechanical response during CO2 geological sequestration." Computers & Geosciences 54:28-37.  doi:10.1016/j.cageo.2013.01.015

2012

  • Liu C, and Y Fang. 2012. "Kinetic Modeling of Microbiological Processes." Journal of Petroleum & Environmental Biotechnology 3(6):Article No. e109. 
  • White MD, and Y Fang. 2012. "STOMP-ECKEChem: An Engineering Perspective on Reactive Transport in Geologic Media." In Groundwater Reactive Transport Models, ed. F Zhang, GT Yeh and JC Parker, pp. 112--140.  Bentham Science Publishers, Oak Park, IL. 
  • Xu Z, Y Fang, TD Scheibe, and AHR Bonneville. 2012. "A fluid pressure and deformation analysis for geological sequestration of carbon dioxide." Computers & Geosciences 46:31-37. 

2011

  • Fang Y, TD Scheibe, R Mahadevan, S Garg, PE Long, and DR Lovley. 2011. "Direct coupling of a genome-scale microbial in silico model and a groundwater reactive transport model." Journal of Contaminant Hydrology 122(1-4):96-103.  doi:10.1016/j.jconhyd.2010.11.007
  • Yabusaki SB, Y Fang, KH Williams, CJ Murray, AL Ward, R Dayvault, SR Waichler, DR Newcomer, FA Spane, and PE Long. 2011. "Variably Saturated Flow and Multicomponent Biogeochemical Reactive Transport Modeling of a Uranium Bioremediation Field Experiment." Journal of Contaminant Hydrology 126(3-4):271-290.  doi:10.1016/j.jconhyd.2011.09.002

2010

  • Scheibe TD, BJ Palmer, KL Schuchardt, Y Fang, and AM Tartakovsky. 2010. "Simulations of Subsurface Flow and Transport at the Pore and Continuum Scales." In SciDAC 2010 Scientific Discovery Through Advanced Computing, July 11-15, 2010, Chattanooga, Tennessee.  US Department of Energy, Office of Science, Washington DC. 
  • Yeh GT, Y Fang, F Zhang, J Sun, Y Li, MH Li, and MD Siegel. 2010. "Numerical modeling of coupled fluid flow and thermal and reactive biogeochemical transport in porous and fractured media ." Computational Geosciences 14(1):149-170. 
  • Zhao J, Y Fang, TD Scheibe, DR Lovley, and R Mahadevan. 2010. "Modeling and sensitivity analysis of electron capacitance for Geobacter in sedimentary environments." Journal of Contaminant Hydrology 112(1-4):30-44.  doi:10.1016/j.jconhyd.2009.10.002

2009

  • Fang Y, SB Yabusaki, SJ Morrison, JE Amonette, and PE Long. 2009. "Multicomponent reactive transport modeling of uranium bioremediation field experiments." Geochimica et Cosmochimica Acta 73(20):6029-6051. 
  • Gurumoorthi V, MK Krishnan, Y Fang, BJ Palmer, and D Chavarrķa-Miranda. 2009. "Multiple Component Multiple Data Programming in Subsurface Simulations: The CCA Approach." In Proceedings of the Workshop on Component-Based High Performance Computing (CBHPC 2009).  ACM Press, New York, NY. 
  • Palmer BJ, Y Fang, V Gurumoorthi, GE Hammond, JA Fort, and TD Scheibe. 2009. "Developing a Component-Based Framework for Subsurface Simulation using the Common Component Architecture." In SciDAC 2009: Journal of Physics: Conference Series , vol. 180, no. 1, p. Paper No. 012064.  IOP Publishing, London, United Kingdom.  doi:10.1088/1742-6596/180/1/012064
  • Scheibe TD, R Mahadevan, Y Fang, S Garg, PE Long, and DR Lovley. 2009. "Coupling a Genome-Scale Metabolic Model with a Reactive Transport Model to Describe In Situ Uranium Bioremediation." Microbial Biotechnology 2(2):274-286.  doi:10.1111/j.1751-7915.2009.00087.x

2008

  • Yabusaki SB, Y Fang, and SR Waichler. 2008. "Building Conceptual Models of Field-Scale Uranium Reactive Transport in a Dynamic Vadose Zone-Aquifer-River System." Water Resources Research 44:W12403.  doi:10.1029/2007WR006617

2007

  • Palmer BJ, Y Fang, GE Hammond, and V Gurumoorthi. 2007. "Component-Based Framework for Subsurface Simulations." In SciDAC 2007. Published in Journal of Physics: Conference Series, vol. 78, p. 012056 (5 pages).  IOP Publishing, Bristol, United Kingdom.  doi:10.1088/1742-6596/78/1/012056
  • Yabusaki SB, Y Fang, PE Long, CT Resch, AD Peacock, J Komlos, Jr., PR Jaffe, SJ Morrison, R Dayvault, DC White, and RT Anderson. 2007. "Uranium Removal from Groundwater via In Situ Biostimulation: Field-Scale Modeling of Transport and Biological Processes." Journal of Contaminant Hydrology 93(2007):216-235.  doi:10.1016/j.jconhyd.2007.02.005

2006

  • Fang Y, SB Yabusaki, and G Yeh. 2006. "A General Simulator for Reaction-Based Biogeochemical Processes." Computers & Geosciences 32(1):64-72.  doi:10.1016/j.cageo.2005.05.003
  • Scheibe TD, Y Fang, CJ Murray, EE Roden, J Chen, YJ Chien, SC Brooks, and SS Hubbard. 2006. "Transport and biogeochemical reaction of metals in a physically and chemically heterogeneous aquifer." Geosphere 2(4):220-235. 
  • Tartakovsky AM, TD Scheibe, G Redden, P Meakin, and Y Fang. 2006. "Smoothed Particle Hydrodynamics Model for Reactive Transport and Mineral Precipitation." In CMWR XVI - International Conference on Computational Methods in Water Resources. Copenhagen, Denmark, June 18-22, 2006, p. 8 pages.  Technical University of Denmark (DTU), Copenhagen, Denmark. 

2004

  • Fang Y, SB Yabusaki, and GT Yeh. 2004. "A generic reaction-based biogeochemical simulator." In Proceedings of the 15th International Conference on Computational Methods in Water Resources (CMWR XV), June 13-17, 2004 Chapel Hill, NC, USA. Computational Methods in Water Resources, vol. 1, ed. C.T. Miller, M.W. Farthing, W.G. Gray, and G.F. Pinder, pp. 869-878.  Elsevier, Amsterdam, Netherlands. 

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